2023 / 06

Next Paper
DOI: 10.24075/brsmu.2023.047

ORIGINAL RESEARCH

Comparative bioinformatics analysis of antimicrobial resistance gene pool in the genomes of representatives of genus Corynebacterium

Kulshan TA, Bugaeva IO, Soboleva EF, Allyanova MS, Popov DA, Shvidenko IG
About authors

Razumovsky Saratov State Medical University, Saratov, Russia

Correspondence should be addressed: Tatiana А. Kulshan
B. Kazachiya, 112, Saratov, 410012, Russia; ur.xednay@nahsluk.anajtat

About paper

Author contribution: Kulshan TА — study planning, literature review, dealing with molecular genetic data (selection of genomes, genome annotation, comparative analysis of gyrA amino acid sequences), data analysis, manuscript writing; Bugaeva IO — study planning, data analysis, interpretation of findings, manuscript writing; Soboleva EF — literature review, data analysis, manuscript writing; Allyanova MS — literature review, analysis of the antimicrobial resistance gene pool in the genomes of corynebacterial strains, dealing with the PATRIC online service; Popov DA — literature review, search for gyrA amino acid sequences in the genomes of corynebacterial strains, comparative analysis of amino acid sequences; Shvidenko IG — advising during manuscript writing, data analysis.

Received: 2023-10-20 Accepted: 2023-12-03 Published online: 2023-12-19
|
  1. Kharseeva GG, Voronina NA, Gasretova TD, Tyukavkina SYu, Sylka OI, Mironov AYu. The sensitivity to antibiotics of Corynebacterium non diphtheriae isolated in hospitals of Rostov-on-don and the Rostovskaya oblast. Russian Clinical Laboratory Diagnostics. 2017; 62 (8): 502–6. Russian.
  2. Fernandez LV, Fortuny AS, Rodriguez EF. Corynebacterium pyruviciproducens and Corynebacterium amycolatum mastitis in immunocompetent no breastfeeding women. Revista Argentina de Microbiologia. 2021; 53 (11): 39–42.
  3. Jesus HNR, Rocha DJPG, Ramos RTJ, Silva A, Brenig B, Góes-Neto A, at al. Pan-genomic analysis of Corynebacterium amycolatum gives insights into molecular mechanisms underpinning the transition to a pathogenic phenotype. Front Microbiol. 2022; 13: 1–11.
  4. Kharseeva GG, Voronina NA, Mironov AYu, Kharysova AR. The antibiotics sensitivity of strains of corinebacterium non diphtheriae circulating in Rostov-on-don and Rostov oblast. Russian Clinical Laboratory Diagnostics. 2012; 10: 62–4. Russian.
  5. Alibi S, Ferjani A, Boukadida J, Cano ME, Fernández-Martínez M, Martínez-Martínez L, at al. Occurrence of Corynebacterium striatum as an emerging antibiotic-resistant nosocomial pathogen in a Tunisian hospital. Sci Rep. 2017; 7: 1–8. PubMed PMID: 28848236.
  6. Kharseeva GG, Mangutov EO, But OM, Chepusova AV, Alutina EL. Analysis of the frequency of allocation of Corynebacteria nondiphtheria from patients with inflammatory diseases of the respiratory tract. Russian Clinical Laboratory Diagnostics. 2019; 64 (7): 430–34. Russian.
  7. Sahu V, Pathak MM, Das P, Ravi A. Corynebacterium jeikeium as an unusual cause of keratitis: a case report from a tertiary care hospital in Chhattisgarh, India. Cureus. 2021; 13 (12): 1–11.
  8. Salem N, Salem L, Saber S, Ismail G, Bluth MH. Corynebacterium urealyticum: a comprehensive review of an understated organism. Infection and Drug Resistance. 2015; 8: 129–45.
  9. Gladysheva IV, Chertkov KL, Cherkasov SV, Khlopko YA, Kataev VY, Valyshev AV. Probiotic potential, safety properties, and antifungal activities of Corynebacterium amycolatum ICIS 9 and Corynebacterium amycolatum ICIS 53 strains. Probiotics Antimicrob Proteins. 2023; 15 (3): 588–600. PubMed PMID: 34807410.
  10. Gladysheva IV, Cherkasov SV, Khlopko YA, Plotnikov AO. Genome characterization and probiotic potential of Corynebacterium amycolatum human vaginal isolates. Microorganisms. 2022; 10 (2): 1–17. PubMed PMID: 35208706.
  11. Gladysheva IV, Khlopko YA, Cherkasov SV. Draft genome sequence of the vaginal isolate Corynebacterium amycolatum ICIS 9. Genome Announc. 2017; 5 (37): 1–2. PubMed PMID: 28912325.
  12. Ramos JN, Rodrigues IDS, Baio Pa VP, Veras JFC, Ramos RTJ, Pacheco LG, et al. Genome sequence of a multidrug-resistant Corynebacterium striatum isolated from bloodstream infection from a nosocomial outbreak in Rio de Janeiro, Brazil. Mem. Inst. Oswaldo Cruz. 2018; 113 (9): 1–5.
  13. Sierra JM, Martinez-Martinez L, Vázquez F, Giralt E, Vila J. Relationship between mutations in the gyrA gene and quinolone resistance in clinical isolates of Corynebacterium striatum and Corynebacterium amycolatum. Antimicrob Agents Chemother. 2005; 49 (5): 1714–19. PubMed PMID: 15855486.
  14. Silva-Santana G, Silva CMF, Olivella JGB, Silva IF, Fernandes LMO, Sued-Karam BR. Worldwide survey of Corynebacterium striatum increasingly associated with human invasive infections, nosocomial outbreak, and antimicrobial multidrug-resistance, 1976–2020. Arch Microbiol. 2021; 203 (5): 1863–80. PubMed PMID: 33625540.
  15. PATRIC (Pathosystems Resource Integration Center). Available from: https://www.patricbrc.org.
  16. UGENE (Unipro UGENE) 48.1. Available from: https://ugene.net/ru/.